edwardslab

The following two subroutines can be used as a drop in replacement for Math::NumberCruncher. This is useful when trying to limit the number of dependencies of your perl script.

The following perl subroutine will read in a fasta formatted file, parse the file, and return all the sequences in a reference to a hash table.

I have been working on getting an understandable flowchart constructed for PHACTS.  Because of PHACTS odd complexity it has been difficult to get a meaningful and understandable chart.  Here is the most current version.

I looked at different strains of the same bacterium, to compare how variant counts might vary. This is of concern to me since I have Biolog plates for a species but not a specific taxon. Below is a table of variant counts returned for the compound C00022, pyruvate.(* an integer denotes that many positive variant counts returns for that reaction; while a 0.01 denotes a zero or blank variant count; a 0.0001 denotes that a NULL was returned for that reaction and taxon)