As a check to see make sure that all my reactions were matching with the correct subsystems I did a match to make sure there were no erroneous reactions. The data accounts for about 12 genomes and 96 wells of Biolog plates. The following is a list of the Subsystem breakdown and how many reactions fell under each subsytem.
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Cofactors, Vitamins, Prosthetic Groups, Pigments => 6468
Cell Wall and Capsule => 5250
Photosynthesis => 42
Potassium metabolism => 378
Miscellaneous => 532
Membrane Transport => 1946
Protein Metabolism => 1190
RNA Metabolism => 1260
Nucleosides and Nucleotides => 3710
Cell Division and Cell Cycle => 238
Motility and Chemotaxis => 70
Regulation and Cell signaling => 336
Secondary Metabolism => 2380
DNA Metabolism => 84
Virulence => 1260
Fatty Acids, Lipids, and Isoprenoids => 3332
Nitrogen Metabolism => 798
Respiration => 1624
Dormancy and Sporulation => 154
Stress Response => 1246
Sulfur Metabolism => 1834
Amino Acids and Derivatives => 20020
Metabolism of Aromatic Compounds => 3850
Phosphorus Metabolism => 154
Carbohydrates => 54474
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Subsystems that were excluded prior to the tally were: 'Experimental Subsystems', 'NULL', 'Phages, Prophages, Transposable elements', 'Clustering-based subsystems', and anything tagged as 'Phoenix_copy'.
