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Tools for Detecting Macrolide Resistance in the Human Microbiome
Robert Schmieder, Yan Wei Lim, Anca Segall, Molly Schmid, and Robert Edwards
Presented at: Advances in Genome Biology & Technology (AGBT) 2012
Download PDF file (1.2 MB) |
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Host prediction for viral metagenomes using oligonucleotide profiles
Michiyo Wellington-Oguri, Robert Schmieder, Barbara Bailey, Robert A. Edwards, and Bas E. Dutilh
Presented at: Student Research Symposium (SRS) 2012
Download PDF file (705 KB) |
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Database Structure and Visualization Software for Microbial Physiology Data
Nicholas Turner, Haquio Liu, Jeremy Frank, and Robert Edwards
Presented at: Student Research Symposium (SRS) 2012
Download PDF file (176 KB) |
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Tools for Fast Sequence Alignment
Sajia Akhter and Robert Edwards
Presented at: Student Research Symposium (SRS) 2012
Download PDF file (1.3 MB) |
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Tools for Quality Control and Preprocessing of Metagenomic Datasets
Robert Schmieder, Yan Wei Lim and Robert Edwards
Presented at: Pacific Symposium on Biocomputing (PSB) 2011
Download PDF file (4.2 MB) |
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FACIL: fast and accurate genetic code inference and logo
Bas E. Dutilh, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A.F.T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Françoijs, Hendrik G. Stunnenberg, Marc Strous, Mike S.M. Jetten, Huub J.M. Op den Camp and Martijn A. Huynen
Presented at: SDMG All Day Meeting 2011
Download PDF file (3.6 MB) |
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Genomic Comparison of Salmonella enterica Serovars Enteritidis and Dublin
D. Matthews, R. Schmieder, J. Busch, N. Cassman, M. Doherty, D. Green, B. Matolock, B. Heffernan, G. Olsen, L. Farris, D. Schiffeli, S. Maloy, E. Dinsdale, and R. Edwards
Presented at: ASM 2011
Download PDF file (561 KB) |
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PhiSpy: A novel similarity-independent tool for predicting prophages in microbial genomes
Sajia Akhter, Ramy K Aziz, Robert A Edwards
Presented at: Evergreeen International Phage Biology Meeting
Download PDF file (1.5 MB) |
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Real-Time Metagenomics Analysis
Daniel A. Cuevas, Joshua A. Hoffman and Robert A. Edwards
Presented at: ASM 2010
Download PDF file (980 KB) |
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Investigating the Frequency of Quinolone Resistance Genes in Environmental Samples
Sajia Akhter, Anca M. Segall, Molly Schmid and Robert A. Edwards
Presented at: ASM 2010
Download PDF file (1.5 MB) |
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Identification of Macrolide Resistance Alleles in Environmental Metagenomes
Robert Schmieder, Anca Segall, Molly Schmid and Robert Edwards
Presented at: ASM 2010
Download PDF file (2.7 MB) |
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Fast Identification and Removal of Sequence Contaminations from Genomic and Metagenomic Datasets
Robert Schmieder and Robert Edwards
Presented at: Human Microbiome Meeting 2010
Download PDF file (1.2 MB) |
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PHANTOME: Phage Annotation Tools and Methods
Ramy K. Aziz, Brad Hull, Bhakti Dwivedi, Joe Anderson, Bonnie Hurwitz, JP Massar, Matthew Sullivan, Jeff Elhai, Mya Breitbart, Ross Overbeek and Robert A. Edwards
Presented at: Institut Pasteur Virus of Microbes meeting 2010
Download PDF file (808 KB) |
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Phages Without Borders: Distribution of Phage Nucleic Acids in 310 Metagenomes
Ramy K. Aziz, Mya Breitbart and Robert A. Edwards
Presented at: ASM 2010
Download PDF file (1.9 MB) |
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Phage Annotation Tools and Methods
Ramy K. Aziz, Bhakti Dwivedi, Joe Anderson, Bonnie Hurwitz, Brad Hull, JP Massar, Mya Breitbart, Matthew Sullivan, Jeff Elhai and Robert A. Edwards
Presented at: ASM 2010
Download PDF file (924 KB) |
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Predicting Phage Preferences: Lytic vs. Lysogenic Lifestyle from Genomes
Katelyn McNair, Rob Edwards and Barbara Bailey
Presented at: CSHL meeting 2010
Download PDF file (269 KB) |
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ADAPTdb/ADAPT - A Framework for the Analysis of ARISA Data Sets
Robert Schmieder, Matthew Haynes, Elizabeth Dinsdale, Forest Rohwer, and Robert Edwards
Presented at: ISMB/ECCB and M3 2009
Download PDF file (812 KB) |
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Deviation of amino acid utilization and correlation with G+C composition in bacterial genome
Sajia Akhter, Hochul K Lee, Barbara Bailey, Peter Salamon, Robert Edwards
Presented at: Applied Computational Science and Engineering Student Support (ACSESS) 2009
Download PDF file (1.6 MB) |
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Assembler for SOLiD data: by Improving memory management of Velvet assembler
Sajia Akhter and Robert Edwards
Presented at: Rocky Mountain Bioinformatics Conference (Rocky) 2009
Download PDF file (1.0 MB) |
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Phage Annotation Tools and Methods
Ramy K. Aziz, Bhakti Dwivedi, Joe Anderson, Bonnie Hurwitz, JP Massar, Mya Breitbart, Matthew Sullivan, Jeff Elhai and Robert A. Edwards
Presented at: Rocky Mountain Bioinformatics Conference (Rocky) 2009
Download PDF file (940 KB) |
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Transition in Vibrio spp. correlates with human activity in the Northern Line Islands
Robert Schmieder, Tracy McDole, Elizabeth Dinsdale, Matthew Haynes, Forest Rohwer, Robert Edwards
Presented at: International Coral Reef Symposium (ICRS) 2008
Download PDF file (3.5 MB) |
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ADAPTdb/ADAPT - A Framework for the Analysis of ARISA Data Sets
Robert Schmieder, Matthew Haynes, Elizabeth Dinsdale, Forest Rohwer, and Robert Edwards
Presented at: Metagenomics 2008
Download PDF file (1.2 MB) |
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Publications 
