FOCUS, an innovative and agile model to profile and report organisms present in metagenomic samples based on composition usage without sequence length dependencies.
Cite FOCUS
Silva, G. G. Z., D. A. Cuevas, B. E. Dutilh, and R. A. Edwards, 2014: FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares. PeerJ, 2, e425, doi:10.7717/peerj.425.
FOCUS (standalone version) now generates output in the STAMP format