Category Archives: Posters

poster

2008

poster

Transition in Vibrio spp. correlates with human activity in the Northern Line Islands

Robert Schmieder, Tracy McDole, Elizabeth Dinsdale, Matthew Haynes, Forest Rohwer, Robert Edwards


Presented at: International Coral Reef Symposium (ICRS) 2008
Download PDF file (3.5 MB)

poster

ADAPTdb/ADAPT – A Framework for the Analysis of ARISA Data Sets

Robert Schmieder, Matthew Haynes, Elizabeth Dinsdale, Forest Rohwer, and Robert Edwards


Presented at: Metagenomics 2008
Download PDF file (1.2 MB)

poster

2009

poster

ADAPTdb/ADAPT – A Framework for the Analysis of ARISA Data Sets

Robert Schmieder, Matthew Haynes, Elizabeth Dinsdale, Forest Rohwer, and Robert Edwards


Presented at: ISMB/ECCB and M3 2009
Download PDF file (812 KB)

poster

Deviation of amino acid utilization and correlation with G+C composition in bacterial genome

Sajia Akhter, Hochul K Lee, Barbara Bailey, Peter Salamon, Robert Edwards


Presented at: Applied Computational Science and Engineering Student Support (ACSESS) 2009
Download PDF file (1.6 MB)

poster

Assembler for SOLiD data: by Improving memory management of Velvet assembler

Sajia Akhter and Robert Edwards


Presented at: Rocky Mountain Bioinformatics Conference (Rocky) 2009
Download PDF file (1.0 MB)

poster

Phage Annotation Tools and Methods

Ramy K. Aziz, Bhakti Dwivedi, Joe Anderson, Bonnie Hurwitz, JP Massar, Mya Breitbart, Matthew Sullivan, Jeff Elhai and Robert A. Edwards


Presented at: Rocky Mountain Bioinformatics Conference (Rocky) 2009
Download PDF file (940 KB)

poster

2011

poster

Tools for Quality Control and Preprocessing of Metagenomic Datasets

Robert Schmieder, Yan Wei Lim and Robert Edwards


Presented at: Pacific Symposium on Biocomputing (PSB) 2011
Download PDF file (4.2 MB)

poster

FACIL: fast and accurate genetic code inference and logo

Bas E. Dutilh, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A.F.T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Fran├žoijs, Hendrik G. Stunnenberg, Marc Strous, Mike S.M. Jetten, Huub J.M. Op den Camp and Martijn A. Huynen


Presented at: SDMG All Day Meeting 2011
Download PDF file (3.6 MB)

poster

Genomic Comparison of Salmonella enterica Serovars Enteritidis and Dublin

D. Matthews, R. Schmieder, J. Busch, N. Cassman, M. Doherty, D. Green, B. Matolock, B. Heffernan, G. Olsen, L. Farris, D. Schiffeli, S. Maloy, E. Dinsdale, and R. Edwards


Presented at: ASM 2011
Download PDF file (561 KB)

poster

PhiSpy: A novel similarity-independent tool for predicting prophages in microbial genomes

Sajia Akhter, Ramy K Aziz, Robert A Edwards


Presented at: Evergreeen International Phage Biology Meeting
Download PDF file (1.5 MB)

poster

2012

poster

Tools for Detecting Macrolide Resistance in the Human Microbiome

Robert Schmieder, Yan Wei Lim, Anca Segall, Molly Schmid, and Robert Edwards


Presented at: Advances in Genome Biology & Technology (AGBT) 2012
Download PDF file (1.2 MB)

poster

Host prediction for viral metagenomes using oligonucleotide profiles

Michiyo Wellington-Oguri, Robert Schmieder, Barbara Bailey, Robert A. Edwards, and Bas E. Dutilh


Presented at: Student Research Symposium (SRS) 2012
Download PDF file (705 KB)

poster

Database Structure and Visualization Software for Microbial Physiology Data

Nicholas Turner, Haquio Liu, Jeremy Frank, and Robert Edwards


Presented at: Student Research Symposium (SRS) 2012
Download PDF file (176 KB)

poster

Tools for Fast Sequence Alignment

Sajia Akhter and Robert Edwards


Presented at: Student Research Symposium (SRS) 2012
Download PDF file (1.3 MB)

poster

2010

poster

Real-Time Metagenomics Analysis

Daniel A. Cuevas, Joshua A. Hoffman and Robert A. Edwards


Presented at: ASM 2010
Download PDF file (980 KB)

poster

Investigating the Frequency of Quinolone Resistance Genes in Environmental Samples

Sajia Akhter, Anca M. Segall, Molly Schmid and Robert A. Edwards


Presented at: ASM 2010
Download PDF file (1.5 MB)

poster

Identification of Macrolide Resistance Alleles in Environmental Metagenomes

Robert Schmieder, Anca Segall, Molly Schmid and Robert Edwards


Presented at: ASM 2010
Download PDF file (2.7 MB)

poster

Fast Identification and Removal of Sequence Contaminations from Genomic and Metagenomic Datasets

Robert Schmieder and Robert Edwards


Presented at: Human Microbiome Meeting 2010
Download PDF file (1.2 MB)

poster

PHANTOME: Phage Annotation Tools and Methods

Ramy K. Aziz, Brad Hull, Bhakti Dwivedi, Joe Anderson, Bonnie Hurwitz, JP Massar, Matthew Sullivan, Jeff Elhai, Mya Breitbart, Ross Overbeek and Robert A. Edwards


Presented at: Institut Pasteur Virus of Microbes meeting 2010
Download PDF file (808 KB)

poster

Phages Without Borders: Distribution of Phage Nucleic Acids in 310 Metagenomes

Ramy K. Aziz, Mya Breitbart and Robert A. Edwards


Presented at: ASM 2010
Download PDF file (1.9 MB)

poster

Phage Annotation Tools and Methods

Ramy K. Aziz, Bhakti Dwivedi, Joe Anderson, Bonnie Hurwitz, Brad Hull, JP Massar, Mya Breitbart, Matthew Sullivan, Jeff Elhai and Robert A. Edwards


Presented at: ASM 2010
Download PDF file (924 KB)

poster

Predicting Phage Preferences: Lytic vs. Lysogenic Lifestyle from Genomes

Katelyn McNair, Rob Edwards and Barbara Bailey


Presented at: CSHL meeting 2010
Download PDF file (269 KB)

Posters from the lab

We like to present posters and we maintain a rotating display of them in the 2nd and 4th floor halls of GMCS at SDSU. Come by and see them life-sized sometime. Here are some of our posters. If you see us at a meeting, say hi!